Genome organization and definition of the Penaeus monodon viral responsive protein 15 (PmVRP15) promoter

Abstract The viral responsive protein 15 from the black tiger shrimp Penaeus monodon (PmVRP15) is a highly responsive gene upon white spot syndrome virus (WSSV) challenge. It is identified from hemocyte and important for WSSV trafficking and assembly. However, the knowledge of PmVRP15 gene regulation is limited. In the present study, the genome organization and 5′-upstream promoter sequences of PmVRP15 gene were investigated. The PmVRP15 gene was found to contain 4 exons interrupted by 3 introns and the start codon was located in the exon 2. The transcription start site and TATA box were also determined from the 5′ upstream sequence. By using the narrow down experiment, the 5′ upstream promoter active region was determined to be at the nucleotide positions −525 to +612. Mutagenesis of the putative transcription factor (TF) binding sites revealed that the binding sites of interferon regulatory factor (IRF) (−495/-479) was a repressor-binding site whereas those of the octamer transcription factor 1 (Oct-1) (−275/-268) and the nuclear factor of activated T-cells transcription factor (NFAT) (−228/-223) were activator-binding sites. This is the first report on the transcription factors that might play essential roles in modulating the PmVRP15 gene expression. Nevertheless, the underlying regulation mechanism of PmVRP15 gene expression needs further investigation.