Additional file 9: Figure S2. of Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration

Phylogenetic tree of haplogroup Q3-L275 with read depth value ranged from 2. 44 Q3-L275 samples and 1 Q1a-M346 outgroup. Constructed using ML GTRGAMMA model with the RAxML software, from the alignment obtained with read depth > = 2, base quality > = 15 and mapping quality > = 10, call rate = 60%. Three samples sequenced with the Complete Genomic (CG) technology were excluded due to problems with estimating their exact read depth values. The topology is the same as shown in the main tree (see Additional file 3: Table S2) except for the three omitted GC samples, although the method of construction is different. (JPG 79 kb)