A global metagenomic map of urban microbiomes and antimicrobial resistance.
2021
- David Danko
- Daniela Bezdan
- Evan E. Afshin
- Sofia Ahsanuddin
- Chandrima Bhattacharya
- Daniel Butler
- Kern Rei Chng
- Daisy Donnellan
- Jochen Hecht
- Katelyn Jackson
- Katerina Kuchin
- Mikhail Karasikov
- Abigail Lyons
- Lauren Mak
- Dmitry Meleshko
- Harun Mustafa
- Beth Mutai
- Russell Y Neches
- Amanda Ng
- Olga Nikolayeva
- Tatyana Nikolayeva
- Eileen Png
- Krista Ryon
- Jorge L Sanchez
- Heba Shaaban
- Maria A Sierra
- Dominique Thomas
- Ben Young
- Omar O. Abudayyeh
- Josue Alicea
- Malay Bhattacharyya
- Ran Blekhman
- Eduardo Castro-Nallar
- Ana M Cañas
- Aspassia D. Chatziefthimiou
- Robert W. Crawford
- Francesca De Filippis
- Youping Deng
- Christelle Desnues
- Emmanuel Dias-Neto
- Marius Dybwad
- Eran Elhaik
- Danilo Ercolini
- Alina Frolova
- Dennis Gankin
- Jonathan S. Gootenberg
- Alexandra B. Graf
- David C. Green
- Iman Hajirasouliha
- Jaden J.A. Hastings
- Mark Hernandez
- Gregorio Iraola
- Soojin Jang
- André Kahles
- Frank J. Kelly
- Kaymisha Knights
- Nikos C. Kyrpides
- Paweł P. Łabaj
- Patrick K. H. Lee
- Marcus H. Y. Leung
- Per O. Ljungdahl
- Gabriella Mason-Buck
- Ken McGrath
- Cem Meydan
- Emmanuel F. Mongodin
- Milton Ozório Moraes
- Niranjan Nagarajan
- Marina Nieto-Caballero
- Houtan Noushmehr
- Manuela Oliveira
- Stephan Ossowski
- Olayinka Osuolale
- Orhan Ozcan
- David Paez-Espino
- Nicolas Rascovan
- Hugues Richard
- Gunnar Rätsch
- Lynn M. Schriml
- Torsten Semmler
- Osman U. Sezerman
- Leming Shi
- Tieliu Shi
- Rania Siam
- Le Huu Song
- Haruo Suzuki
- Denise Syndercombe-Court
- Scott Tighe
- Xinzhao Tong
- Klas I. Udekwu
- Juan A. Ugalde
- Brandon Valentine
- Dimitar Vassilev
- Elena M. Vayndorf
- Thirumalaisamy P. Velavan
- Jun Wu
- María Mercedes Zambrano
- Jifeng Zhu
- Sibo Zhu
- Christopher E. Mason
- Natasha Abdullah
- Marcos Abraão
- Ait-hamlat Adel
- Muhammad Afaq
- Faisal S. Al-Quaddoomi
- Ireen Alam
- Gabriela E. Albuquerque
- Alex Alexiev
- Kalyn Ali
- Lucia E. Alvarado-Arnez
- Sarh Aly
- Jennifer Amachee
- Maria Joao Amorim
- Majelia Ampadu
- Muhammad Al-Fath Amran
- Nala An
- Watson Andrew
- Harilanto Andrianjakarivony
- Michael Angelov
- Verónica Antelo
- Catharine Aquino
- Alvaro Aranguren
- Luiza F. Araújo
- Hitler Francois Vasquez Arevalo
- Jenny Arevalo
- Carme Arnan
- Lucia Elena Alvarado-Arnez
- Fernanda Arredondo
- Matthew Arthur
- Freddy Asenjo
- Thomas Saw Aung
- Juliette Auvinet
- Núria Aventín
- Sadaf Ayaz
- Silva Baburyan
- Abd-Manaaf Bakere
- Katrin Bakhl
- Thais F. Bartelli
- Erdenetsetseg Batdelger
- François Baudon
- Kevin Becher
- Carla Bello
- Médine Benchouaia
- Hannah Benisty
- Anne-Sophie Benoiston
- Joseph Benson
- Diego Benitez
- Juliana Bernardes
- Denis Bertrand
- Silvia Beurmann
- Tristan Bitard-Feildel
- Lucie Bittner
- Christina Black
- Guillaume Blanc
- Brittany Blyther
- Toni Bode
- Julia Boeri
- Bazartseren Boldgiv
- Kevin Bolzli
- Alexia Bordigoni
- Ciro Borrelli
- Sonia Bouchard
- Jean-Pierre Bouly
- Alicia Boyd
- Gabriela P. Branco
- Alessandra Breschi
- Björn Brindefalk
- Christian Brion
- Alan Briones
- Paulina Buczansla
- Catherine M. Burke
- Aszia Burrell
- Alina Butova
- Irvind Buttar
- Jalia Bynoe
- Sven Bönigk
- Kari O. Bøifot
- Hiram Caballero
- Xiao Wen Cai
- Dayana Calderón
- Angela Cantillo
- Miguel Carbajo
- Alessandra Carbone
- Anais Cardenas
- Katerine Carrillo
- Laurie Casalot
- Sofia Castro
- Ana V Castro
- Astred Castro
- Ana Valeria B. Castro
- Simone Cawthorne
- Jonathan Cedillo
- Salama Chaker
- Jasna Chalangal
- Allison Chan
- Anastasia I. Chasapi
- Starr Chatziefthimiou
- Sreya Ray Chaudhuri
- Akash Keluth Chavan
- Francisco Chávez
- Gregory Chem
- Xiaoqing Chen
- Michelle C. Chen
- Jenn Wei Chen
- Ariel Chernomoretz
- Allaeddine Chettouh
- Daisy Cheung
- Diana Chicas
- Shirley Chiu
- Hira Choudhry
- Carl Chrispin
- Kianna Ciaramella
- Erika Cifuentes
- Jake Cohen
- David A. Coil
- Sylvie Collin
- Colleen Conger
- Romain Conte
- Flavia Corsi
- Cecilia N. Cossio
- Ana F. Costa
- Delisia Cuebas
- Bruno D’Alessandro
- Katherine E. Dahlhausen
- Aaron E. Darling
- Pujita Das
- Lucinda B. Davenport
- Laurent David
- Natalie R. Davidson
- Gargi Dayama
- Stéphane Delmas
- Chris K Deng
- Chloé Dequeker
- Alexandre Désert
- Monika Devi
- Felipe S. Dezem
- Clara N. Dias
- Timothy Ryan Donahoe
- Sonia Dorado
- LaShonda Dorsey
- Valeriia Dotsenko
- Steven Du
- Alexandra Dutan
- Naya Eady
- Jonathan A. Eisen
- Miar Elaskandrany
- Lennard Epping
- Juan P. Escalera-Antezana
- Cassie L. Ettinger
- Iqra Faiz
- Luice Fan
- Nadine Farhat
- Emile Faure
- Fazlina Fauzi
- Charlie Feigin
- Skye Felice
- Laís Pereira Ferreira
- Gabriel Figueroa
- Aubin Fleiss
- Denisse Flores
- Jhovana L. Velasco Flores
- Marcos A. S. Fonseca
- Jonathan Foox
- Juan Carlos Forero
- Aaishah Francis
- Kelly French
- Pablo Fresia
- Jacob Friedman
- Jaime J. Fuentes
- Josephine Galipon
- Mathilde Garcia
- Laura Garcia
- Catalina García
- Annie Geiger
- Samuel M. Gerner
- Sonia L. Ghose
- Dao Phuong Giang
- Matías Giménez
- Donato Giovannelli
- Dedan Githae
- Spyridon Gkotzis
- Liliana Godoy
- Samantha Goldman
- Gaston H. Gonnet
- Juana Gonzalez
- Andrea González
- Camila Gonzalez-Poblete
- Andrew N. Gray
- Tranette Gregory
- Charlotte Greselle
- Sophie Guasco
- Juan Guerra
- Nika Gurianova
- Wolfgang Haehr
- Sébastien Halary
- Felix Hartkopf
- Arya Hawkins-Zafarnia
- Nur Hazlin Hazrin-Chong
- Eric Helfrich
- Eva Hell
- Tamera Henry
- Samuel Hernández
- Pilar López Hernández
- David Hess-Homeier
- Lauren E. Hittle
- Nghiem Xuan Hoan
- Aliaksei Holik
- Chiaki Homma
- Irene Hoxie
- Michael Huber
- Elizabeth Humphries
- Stephanie Hyland
- Andrea Hässig
- Roland Häusler
- Nathalie Hüsser
- Robert A. Petit
- Badamnyambuu Iderzorig
- Mizuki Igarashi
- Shaikh B. Iqbal
- Shino Ishikawa
- Sakura Ishizuka
- Sharah Islam
- Riham Islam
- Kohei Ito
- Sota Ito
- Takayuki Ito
- Tomislav Ivanković
- Tomoki Iwashiro
- Sarah Jackson
- Joann Jacobs
- Marisano James
- Marianne Jaubert
- Marie-Laure Jerier
- Esmeralda Jiminez
- Ayantu Jinfessa
- Ymke De Jong
- Hyun-Woo Joo
- Guilllaume Jospin
- Takema Kajita
- Affifah Saadah Ahmad Kassim
- Nao Kato
- Amrit Kaur
- Inderjit Kaur
- Fernanda de Souza Gomes Kehdy
- Vedbar S. Khadka
- Shaira Khan
- Mahshid Khavari
- Michelle Ki
- Gina Kim
- Hyung Jun Kim
- Sangwan Kim
- Ryan J. King
- Giuseppe KoLoMonaco
- Ellen Koag
- Nadezhda Kobko-Litskevitch
- Maryna Korshevniuk
- Michael Kozhar
- Jonas Krebs
- Nanami Kubota
- Andrii Kuklin
- Sheelta S. Kumar
- Rachel Kwong
- Lawrence Kwong
- Ingrid Lafontaine
- Juliana Lago
- Tsoi Ying Lai
- Elodie Laine
- Manolo Laiola
- Olha Lakhneko
- Isha Lamba
- Gerardo de Lamotte
- Romain Lannes
- Eleonora de Lazzari
- Madeline Leahy
- Hyun-Jung Lee
- Yunmi Lee
- Lucy Lee
- Vincent Lemaire
- Emily Leong
- Dagmara Lewandowska
- Chenhao Li
- Weijun Liang
- Moses Lin
- Priscilla Lisboa
- Anna Litskevitch
- Eric Minwei Liu
- Tracy Liu
- Mayra Arauco Livia
- Yui Him Lo
- Sonia Losim
- Manon Loubens
- Jennifer Q. Lu
- Olexandr Lykhenko
- Simona Lysáková
- Salah Mahmoud
- Sara Abdul Majid
- Natalka Makogon
- Denisse Maldonado
- Krizzy Mallari
- Tathiane M. Malta
- Maliha Mamun
- Dimitri Manoir
- Germán Marchandon
- Natalia Marciniak
- Sonia Marinovic
- Brunna Marques
- Nicole Mathews
- Yuri Matsuzaki
- Vincent Matthys
- Madelyn May
- Elias McComb
- Annabelle Meagher
- Adiell Melamed
- Wayne Menary
- Katterinne N. Mendez
- Ambar Mendez
- Irène Mauricette Mendy
- Irene Meng
- Ajay Menon
- Mark Menor
- Roy Meoded
- Nancy Merino
- Karishma Miah
- Mathilde Mignotte
- Tanja Miketic
- Wilson Miranda
- Athena Mitsios
- Ryusei Miura
- Kunihiko Miyake
- Maria D Moccia
- Natasha Mohan
- Mohammed Mohsin
- Karobi Moitra
- Mauricio Moldes
- Laura Molina
- Jennifer Molinet
- Orgil-Erdene Molomjamts
- Eftar Moniruzzaman
- Sookwon Moon
- Isabelle de Oliveira Moraes
- Mario Moreno
- Maritza S. Mosella
- Josef W. Moser
- Christopher Mozsary
- Amanda L. Muehlbauer
- Oasima Muner
- Muntaha Munia
- Naimah Munim
- Maureen Muscat
- Tatjana Mustac
- Cristina Muñoz
- Francesca Nadalin
- Areeg Naeem
- Dorottya Nagy-Szakal
- Mayuko Nakagawa
- Ashanti Narce
- Masaki Nasu
- Irene González-Navarrete
- Hiba Naveed
- Bryan Nazario
- Narasimha Rao Nedunuri
- Thomas Neff
- Aida Nesimi
- Wan Chiew Ng
- Synti Ng
- Gloria Nguyen
- Elsy Ngwa
- Agier Nicolas
- Pierre Nicolas
- Abdollahi Nika
- Hosna Noorzi
- Avigdor Nosrati
- Diana N. Nunes
- Kathryn O'Brien
- Niamh B. O'Hara
- Gabriella Oken
- Rantimi A. Olawoyin
- Javier Quilez Oliete
- Kiara Olmeda
- Tolulope Oluwadare
- Itunu A. Oluwadare
- Nils Ordioni
- Jenessa Orpilla
- Jacqueline Orrego
- Melissa Ortega
- Princess Osma
- Israel O. Osuolale
- Oluwatosin M. Osuolale
- Mitsuki Ota
- Francesco Oteri
- Yuya Oto
- Rachid Ounit
- Christos A. Ouzounis
- Subhamitra Pakrashi
- Rachel Paras
- Coral Pardo-Esté
- Youngja Park
- Paulina Pastuszek
- Suraj Patel
- Jananan Pathmanathan
- Andrea Patrignani
- Manuel Pérez
- Ante Peros
- Sabrina Persaud
- Anisia Peters
- Adam Phillips
- Lisbeth Pineda
- Melissa P. Pizzi
- Alma Plaku
- Alketa Plaku
- Brianna Pompa-Hogan
- María Gabriela Portilla
- Leonardo Posada
- Max Priestman
- Bharath Prithiviraj
- Sambhawa Priya
- Phanthira Pugdeethosal
- Catherine E. Pugh
- Benjamin Pulatov
- Angelika Pupiec
- Kyrylo Pyrshev
- Tao Qing
- Saher Rahiel
- Savlatjon Rahmatulloev
- Kannan Rajendran
- Aneisa Ramcharan
- Adán Ramírez-Rojas
- Shahryar Rana
- Prashanthi Ratnanandan
- Timothy D. Read
- Hubert Rehrauer
- Renee Richer
- Alexis Rivera
- Michelle Rivera
- Alessandro Robertiello
- Courtney Robinson
- Paula Rodriguez
- Nayra Aguilar Rojas
- Paul Roldán
- Anyelic Rosario
- Sandra Roth
- Maria del Mar Vivanco Ruiz
- Stephen Eduard Boja Ruiz
- Kaitlan Russell
- Mariia Rybak
- Thais S. Sabedot
- Mahfuza Sabina
- Ikuto Saito
- Yoshitaka Saito
- Gustavo Adolfo Malca Salas
- Cecilia Salazar
- Kaung Myat San
- Jorge Sanchez
- Khaliun Sanchir
- Ryan Sankar
- Paulo Thiago de Souza Santos
- Zulena Saravi
- Kai Sasaki
- Yuma Sato
- Masaki Sato
- Seisuke Sato
- Ryo Sato
- Kaisei Sato
- Nowshin Sayara
- Steffen Schaaf
- Oli Schacher
- Anna-Lena M. Schinke
- Ralph Schlapbach
- Christian Schori
- Jason R. Schriml
- Felipe Segato
- Felipe. Sepúlveda
- Marianna S. Serpa
- Paola F. De Sessions
- Juan C. Severyn
- Maheen Shakil
- Sarah Shalaby
- Aliyah Shari
- Hyenah Shim
- Hikaru Shirahata
- Yuh Shiwa
- Ophélie Da Silva
- Jordana M. Silva
- Gwenola Simon
- Shaleni K. Singh
- Kasia Sluzek
- Rebecca Smith
- Eunice So
- Nuria Andreu Somavilla
- Yuya Sonohara
- Nuno Rufino de Sousa
- Camila P. E. de Souza
- Jason Sperry
- Nicolas Sprinsky
- Stefan G. Stark
- Antonietta La Storia
- Kiyoshi Suganuma
- Hamood Suliman
- Jill Sullivan
- Arif Asyraf Md Supie
- Chisato Suzuki
- Sora Takagi
- Fumie Takahara
- Naoya Takahashi
- Kou Takahashi
- Tomoki Takeda
- Isabella K. Takenaka
- Soma Tanaka
- Anyi Tang
- Yuk Man Tang
- Emilio Tarcitano
- Andrea Tassinari
- Mahdi Taye
- Alexis Terrero
- Eunice Thambiraja
- Antonin Thiébaut
- Sade Thomas
- Andrew M. Thomas
- Yuto Togashi
- Takumi Togashi
- Anna Tomaselli
- Masaru Tomita
- Itsuki Tomita
- Oliver Toth
- Nora C. Toussaint
- Jennifer M. Tran
- Catalina Truong
- Stefan I. Tsonev
- Kazutoshi Tsuda
- Takafumi Tsurumaki
- Michelle Tuz
- Yelyzaveta Tymoshenko
- Carmen Urgiles
- Mariko Usui
- Sophie Vacant
- Laura E. Vann
- Fabienne Velter
- Valeria Ventorino
- Patricia Vera-Wolf
- Riccardo Vicedomini
- Michael A. Suarez-Villamil
- Sierra Vincent
- Renee Vivancos-Koopman
- Andrew Wan
- Cindy Wang
- Tomoro Warashina
- Ayuki Watanabe
- Samuel Weekes
- Johannes Werner
- David Westfall
- Lothar H. Wieler
- Michelle D. Williams
- Silver A. Wolf
- Brian W. Wong
- Yan Ling Wong
- Tyler Wong
- Rasheena Wright
- Tina Wunderlin
- Ryota Yamanaka
- Jingcheng Yang
- Hirokazu Yano
- George C. Yeh
- Olena Yemets
- Tetiana Yeskova
- Shusei Yoshikawa
- Laraib Zafar
- Yang Zhang
- Shu Zhang
- Amy Zhang
- Yuanting Zheng
- Stas Zubenko
We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.
- Correction
- Source
- Cite
- Save
- Machine Reading By IdeaReader
88
References
19
Citations
NaN
KQI
[]