Repeated and Folded DNA Sequences and Their Modular Ag106+ Cluster

Molecular silver clusters are optical chromophores, and species with distinct spectra form with DNA strands. One such hybrid chromophore is a violet cluster bound to repeated C2X sequences where X ≠ C. We varied the number of C2X repeats and the X nucleobase and consider three observations. First, different lengths of (C2A)y and (C2T)y strands with y = 3–12 identify a minimal (C2X)6 scaffold that forms a specific Ag10 adduct. This cluster has a +6 oxidation state, absorbs between 400–450 nm, and folds its DNA host. Second, different X nucleobases alter the (C2X)6 binding site. The natural nucleobases preferentially form the Ag106+ cluster and yield strong circular dichroism. These ligands coordinate via their heteroatoms, and the N3 of thymine was identified via cluster fluorescence that varies with pH. In contrast, abasic sites and imidazole substitutions suppress circular dichroism and diminish the number of silver adducts. These observations suggest that a (C2X)6 coordinates Ag106+ via multiple nucleob...