Genome sequencing and comparative genomics analysis of Halomonas sp. MT13 reveal genetic adaptation to deep-sea environment

Abstract Halomonas sp. MT13, a moderately psychrotolerant, piezotolerant and exopolysaccharide-producing bacterium, was isolated from deep-sea sediment of the Mariana Trench at the depth of 8300 m. Here, we report the complete genome sequence of strain MT13 and its genomic characteristics related to deep-sea environmental adaptation by comparing with its three closely related Halomonas species. The genome of strain MT13 contains one circular chromosome of 3,643,760 bp without any plasmid. Gene annotation, Cluster of Orthologous Groups (COG) and KEGG analysis showed that strain MT13 possesses a serial of genes involved in deep-sea environmental adaptation, including ectoine biosynthesis, osmolyte transport, and cold-shock response. Compared with type strains of three closely related Halomonas species, strain MT13 has higher proportions of genes assigned to translation, ribosomal structure and biogenesis, and coenzyme, lipid and inorganic ion transport and metabolism, but lacks genes involved in flagellar assembly. The genome of strain MT13 would deepen our knowledge on the adaptation strategies of microorganisms dwelling in deep-sea environment.