Additional file 1: of TRIg: a robust alignment pipeline for non-regular T-cell receptor and immunoglobulin sequences

Is a pdf file containing Supplementary Results, Tables S1-S3 and Figures S1-S2 as described below. Table S1 PCR primer for 5′ RACE and the primer and barcode (MID) sequences used in 454 sequencing. Table S2 Number of VJ annotations by four programs to the SRR941034 data. Table S3 Consistency of VJ annotations to the SRR941034 data. Figure S1 Flow of 5′ RACE experiment. Figure S2 Comparison of alignments by different programs for the SRR941034 data. Please check Fig. 2 of the main text for explanations. Figure S3 Base quality of reads in the (a) first and (b) second quadrant of Fig. 2b of the main text when TRIg is compared to IgBLAST and IMGT. (PDF 312 kb)