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Bernhard O. Palsson

University of California, San Diego
Technical University of Denmark
University of Michigan

851

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72693

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Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

2021 bioRxiv
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Genome-scale metabolic modeling reveals key features of a minimal gene set.

2021 Molecular Systems Biology
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PRECISE 2.0 - an expanded high-quality RNA-seq compendium for Escherichia coli K-12 reveals high-resolution transcriptional regulatory structure

2021 bioRxiv
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An Outline on Ion Signaling

2021
- Bernhard O. Palsson
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MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics.

2021 PLOS Computational Biology
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Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus.

2021
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A systems-guided approach to discover the intracellular target of a novel evolution-drug lead

2021 bioRxiv
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Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media.

2021 GigaScience
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DeepTFactor: A deep learning-based tool for the prediction of transcription factors

2021 Proceedings of the National Academy of Sciences of the United States of America
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Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture

2021 Journal of Industrial Microbiology & Biotechnology
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