Rapid Gram Stain Image Data Interpretation by Means of Deep Learning Frameworks: Protocol for a Retrospective Data Analysis (Preprint)

BACKGROUND In recent years, remarkable progress has been made in deep learning technology and successful use cases have been introduced in the medical domain. However, not many studies have considered high-performance computing to fully appreciate the capability of deep learning technology. OBJECTIVE This paper aims to design a solution to accelerate an automated Gram stain image interpretation by means of a deep learning framework without additional hardware resources. METHODS We will apply and evaluate 3 methodologies, namely fine-tuning, an integer arithmetic-only framework, and hyperparameter tuning. RESULTS The choice of pretrained models and the ideal setting for layer tuning and hyperparameter tuning will be determined. These results will provide an empirical yet reproducible guideline for those who consider a rapid deep learning solution for Gram stain image interpretation. The results are planned to be announced in the first quarter of 2021. CONCLUSIONS Making a balanced decision between modeling performance and computational performance is the key for a successful deep learning solution. Otherwise, highly accurate but slow deep learning solutions can add value to routine care. INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID) DERR1-10.2196/16843.